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IBM Needs Your Help Studying the Human Microbiome

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Humans have been to the Moon and the deepest part of the ocean, but when it comes to understanding what goes on in our own bodies, there's much that still needs to be explored. The human microbiome, for instance, is made of up of trillions of microscopic organisms that dictate everything from our gut health to certain chronic diseases. Now, Boston Magazine reports that IBM is attempting to study the human microbiome like it's never been studied before, and they're calling on the public to help with the effort.

The goal of the initiative, dubbed the Microbiome Immunity Project, is to decode the genomes of the many bacteria living inside the human body. Scientists know that the micobiome is linked to some diseases, such as Type 1 diabetes, Crohn's disease, and ulcerative colitis. By analyzing the proteins these bacteria produce, researchers hope to get a better understanding of how these diseases happen and how to treat them at the microbial level.

To do this, scientists plan to study the proteins related to the 3 million unique bacterial genes of the human microbiome. For comparison, more than 20,000 genes were mapped for the Human Genome Project, and that undertaking lasted 13 years.

Technology has come a long way since that project was completed in 2003, but IBM will still need all the help they can get to make the Microbiome Immunity Project happen. In addition to collaborating with the Broad Institute of MIT and Harvard, Massachusetts General Hospital, University of California-San Diego, and the Flatiron Institute, IBM is calling on members of the public to donate their surplus computing power.

If you're interested in contributing to the citizen science project, you can sign up to join IBM's World Community Grid. From there, you'll be able to download a software program that detects when your computer has extra processing power to offer and uses it to run virtual experiments for the project. "Had World Community Grid not existed, we wouldn't have even contemplated this project," Rob Knight, director of the Center for Microbiome Innovation at UC-San Diego, said in a press statement. "By harnessing the efforts of volunteers, we can do something that exceeds the scale of what we have access to by a factor of thousands. For the first time, we're bringing a comprehensive structural biology picture to the whole microbiome, rather than solving structures one at a time in a piecemeal fashion."

IBM's software won't be able to access anything on your computer other than its processing power, and the company assures users that the system will be tested regularly for vulnerabilities. The crowdsourced computing program has been used to conduct research in areas such as cancer, HIV/AIDS, Zika, clean water, and renewable energy in the past. If IBM can get enough people to take part this time around, they plan to share their data publicly with other scientists working to study the microbiome's role in disease.

[h/t Boston Magazine]

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NOAA, Wikimedia Commons // Public Domain
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Animals
Watch the First-Ever Footage of a Baby Dumbo Octopus
NOAA, Wikimedia Commons // Public Domain
NOAA, Wikimedia Commons // Public Domain

Dumbo octopuses are named for the elephant-ear-like fins they use to navigate the deep sea, but until recently, when and how they developed those floppy appendages were a mystery. Now, for the first time, researchers have caught a newborn Dumbo octopus on tape. As reported in the journal Current Biology, they discovered that the creatures are equipped with the fins from the moment they hatch.

Study co-author Tim Shank, a researcher at the Woods Hole Oceanographic Institution in Massachusetts, spotted the octopus in 2005. During a research expedition in the North Atlantic, one of the remotely operated vehicles he was working with collected several coral branches with something strange attached to them. It looked like a bunch of sandy-colored golf balls at first, but then he realized it was an egg sac.

He and his fellow researchers eventually classified the hatchling that emerged as a member of the genus Grimpoteuthis. In other words, it was a Dumbo octopus, though they couldn't determine the exact species. But you wouldn't need a biology degree to spot its resemblance to Disney's famous elephant, as you can see in the video below.

The octopus hatched with a set of functional fins that allowed it to swim around and hunt right away, and an MRI scan revealed fully-developed internal organs and a complex nervous system. As the researchers wrote in their study, Dumbo octopuses enter the world as "competent juveniles" ready to jump straight into adult life.

Grimpoteuthis spends its life in the deep ocean, which makes it difficult to study. Scientists hope the newly-reported findings will make it easier to identify Grimpoteuthis eggs and hatchlings for future research.

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Penn Vet Working Dog Center
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Stones, Bones, and Wrecks
New Program Trains Dogs to Sniff Out Art Smugglers
Penn Vet Working Dog Center
Penn Vet Working Dog Center

Soon, the dogs you see sniffing out contraband at airports may not be searching for drugs or smuggled Spanish ham. They might be looking for stolen treasures.

K-9 Artifact Finders, a new collaboration between New Hampshire-based cultural heritage law firm Red Arch and the University of Pennsylvania, is training dogs to root out stolen antiquities looted from archaeological sites and museums. The dogs would be stopping them at borders before the items can be sold elsewhere on the black market.

The illegal antiquities trade nets more than $3 billion per year around the world, and trafficking hits countries dealing with ongoing conflict, like Syria and Iraq today, particularly hard. By one estimate, around half a million artifacts were stolen from museums and archaeological sites throughout Iraq between 2003 and 2005 alone. (Famously, the craft-supply chain Hobby Lobby was fined $3 million in 2017 for buying thousands of ancient artifacts looted from Iraq.) In Syria, the Islamic State has been known to loot and sell ancient artifacts including statues, jewelry, and art to fund its operations.

But the problem spans across the world. Between 2007 and 2016, U.S. Customs and Border Control discovered more than 7800 cultural artifacts in the U.S. looted from 30 different countries.

A yellow Lab sniffs a metal cage designed to train dogs on scent detection.
Penn Vet Working Dog Center

K-9 Artifact Finders is the brainchild of Rick St. Hilaire, the executive director of Red Arch. His non-profit firm researches cultural heritage property law and preservation policy, including studying archaeological site looting and antiquities trafficking. Back in 2015, St. Hilaire was reading an article about a working dog trained to sniff out electronics that was able to find USB drives, SD cards, and other data storage devices. He wondered, if dogs could be trained to identify the scents of inorganic materials that make up electronics, could they be trained to sniff out ancient pottery?

To find out, St. Hilaire tells Mental Floss, he contacted the Penn Vet Working Dog Center, a research and training center for detection dogs. In December 2017, Red Arch, the Working Dog Center, and the Penn Museum (which is providing the artifacts to train the dogs) launched K-9 Artifact Finders, and in late January 2018, the five dogs selected for the project began their training, starting with learning the distinct smell of ancient pottery.

“Our theory is, it is a porous material that’s going to have a lot more odor than, say, a metal,” says Cindy Otto, the executive director of the Penn Vet Working Dog Center and the project’s principal investigator.

As you might imagine, museum curators may not be keen on exposing fragile ancient materials to four Labrador retrievers and a German shepherd, and the Working Dog Center didn’t want to take any risks with the Penn Museum’s priceless artifacts. So instead of letting the dogs have free rein to sniff the materials themselves, the project is using cotton balls. The researchers seal the artifacts (broken shards of Syrian pottery) in airtight bags with a cotton ball for 72 hours, then ask the dogs to find the cotton balls in the lab. They’re being trained to disregard the smell of the cotton ball itself, the smell of the bag it was stored in, and ideally, the smell of modern-day pottery, eventually being able to zero in on the smell that distinguishes ancient pottery specifically.

A dog looks out over the metal "pinhweel" training mechanism.
Penn Vet Working Dog Center

“The dogs are responding well,” Otto tells Mental Floss, explaining that the training program is at the stage of "exposing them to the odor and having them recognize it.”

The dogs involved in the project were chosen for their calm-but-curious demeanors and sensitive noses (one also works as a drug-detection dog when she’s not training on pottery). They had to be motivated enough to want to hunt down the cotton balls, but not aggressive or easily distracted.

Right now, the dogs train three days a week, and will continue to work on their pottery-detection skills for the first stage of the project, which the researchers expect will last for the next nine months. Depending on how the first phase of the training goes, the researchers hope to be able to then take the dogs out into the field to see if they can find the odor of ancient pottery in real-life situations, like in suitcases, rather than in a laboratory setting. Eventually, they also hope to train the dogs on other types of objects, and perhaps even pinpoint the chemical signatures that make artifacts smell distinct.

Pottery-sniffing dogs won’t be showing up at airport customs or on shipping docks soon, but one day, they could be as common as drug-sniffing canines. If dogs can detect low blood sugar or find a tiny USB drive hidden in a house, surely they can figure out if you’re smuggling a sculpture made thousands of years ago in your suitcase.

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